Negative Predictive Value: 0.980
So the PPV is 97% -- the probability that the patient actually has the disease.
The formula for doing this by hand uses the Baye's Theorem of probability theory.
Really good explanations on http://en.wikipedia.org/wiki/Positive_pr…
PS. After doing this I realized your prevalence is set to 0.001 which is not the standard 0.500 and my program does now allow to change it. You should redo the calculations by hand and get the answer the other responder here has gotten. (The formula is on the link above.) You might do without the jargon involved but eventually this is where things leads to. =)