If you take a gene sequence from pathogenic E. coli and run it through BLASTX to find that it has a match for an outer membrane autotransporter protein, how could you confirm that this protein is produced by pathogenic E. coli strains?
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To confirm that a protein is expressed, you could do a protein gel, transfer the proteins to a Western Blot, and incubate with an antibody against that protein.
Or, a slightly less solid proof, you could show that the gene is expressed by doing a reverse transcriptase PCR (RT-PCR) on cDNA, so a specific PCR that proves that that particular gene is transcribed into mRNA. It does not prove that protein is produced, but you could at least show that mRNA is made.
Or, a slightly less solid proof, you could show that the gene is expressed by doing a reverse transcriptase PCR (RT-PCR) on cDNA, so a specific PCR that proves that that particular gene is transcribed into mRNA. It does not prove that protein is produced, but you could at least show that mRNA is made.